Jason Rafe Miller
CIS 104 – Introduction to CIS
Education and Work History
West Virginia University: PhD expected
J. Craig Venter Institute, 2004-2017
PI, NASA WV SGC grant, 2021-2022, to build mechanical engineering facilities.
Miller JR & Adjeroh DA (preprint) RNA-seq Parent-of-Origin Classification with Machine Learning applied to Alignment Features.
Bramsiepe J et al. (2023) Structural evidence for MADS-box type I family expansion seen in new assemblies of Arabidopsis arenosa and A. lyrata. The Plant Journal.
van Ekelenburg YS et al. (2022) Spatial and Temporal Regulation of Parent-of-Origin Allelic Expression in the Endosperm. Plant Physiology.
Burnham AJ, Miller JR, et al. (2021) Novel isoforms of influenza virus PA-X and PB1-F2 indicated by automatic annotation. Virus Research.
Miller JR & Adjeroh DA (2020) Exploring Neural Network Models for LncRNA Sequence Identification. Proceedings of IEEE BIBM.
Hornslien KS, Miller JR, Grini PE (2019) Regulation of Parent-of-Origin Allelic Expression in the Endosperm. Plant Physiology.
Miller JR, et al. (2019) A host subtraction database for virus discovery in human cell line sequencing data. F1000Research.
Miller JR, et al. (2018) A draft genome sequence for the Ixodes scapularis cell line, ISE6. F1000Research.
Miller JR, et al. (2018) Analysis of the Aedes albopictus C6/36 genome provides insight into cell line utility for viral propagation. GigaScience.
Koren S, et al. (2017) Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation. Genome Research.
Lien S, Koop BF, et al. (2016) The Atlantic salmon genome provides insights into rediploidization. Nature.
Prüfer K … Svante Pääbo. (2012) The bonobo genome compared with the chimpanzee and human genomes. Nature. Includes Miller J et al. (supplement #2) The Bonobo Shotgun Assembly.